diff -Nru netcdf-4.0.1.orig/configure.ac netcdf-4.0.1/configure.ac
--- netcdf-4.0.1.orig/configure.ac	2009-03-26 12:10:02.000000000 +0000
+++ netcdf-4.0.1/configure.ac	2010-01-28 22:10:56.000000000 +0000
@@ -1159,11 +1159,11 @@
 fi
 if test "x$enable_netcdf_4" = xyes ; then 
    if test "x$HDF5DIR" != x ; then 
-      NC_LIBS="$NC_LIBS -L$HDF5DIR"
+      NC_LIBS="$NC_LIBS -L$HDF5DIR/lib"
    fi
    NC_LIBS="$NC_LIBS -lhdf5_hl -lhdf5 $SZLIB_LIBS"
    if test "x$ZLIBDIR" != x ; then 
-      NC_LIBS="$NC_LIBS -L$ZLIBDIR"
+      NC_LIBS="$NC_LIBS -L$ZLIBDIR/lib"
    fi
    NC_LIBS="$NC_LIBS -lz $LIBS"
 fi
diff -Nru netcdf-4.0.1.orig/nc-config.in netcdf-4.0.1/nc-config.in
--- netcdf-4.0.1.orig/nc-config.in	2009-03-18 20:28:46.000000000 +0000
+++ netcdf-4.0.1/nc-config.in	2010-01-28 21:48:02.000000000 +0000
@@ -4,9 +4,9 @@
 #
 
 prefix=@prefix@
-exec_prefix=${prefix}
-libdir=${exec_prefix}/lib
-includedir=${prefix}/include
+exec_prefix=@exec_prefix@
+libdir=@libdir@
+includedir=@includedir@
 
 cc="@CC@"
 cxx="@CXX@"
diff -Nru netcdf-4.0.1.orig/netcdf.pc.in netcdf-4.0.1/netcdf.pc.in
--- netcdf-4.0.1.orig/netcdf.pc.in	2009-03-19 12:22:33.000000000 +0000
+++ netcdf-4.0.1/netcdf.pc.in	2010-01-28 22:11:32.000000000 +0000
@@ -6,7 +6,7 @@
 cppcompiler=@CXX@
 fcompiler=@FC@
 fflags=@FFLAGS@ -I${includedir}
-flibs=@FLIBS@ @NC_FLIBS@
+flibs=@NC_FLIBS@
 
 Name: @PACKAGE@
 Description: NetCDF Client Library